Target-Decoy with Mass Binning: a simple and effective validation method for shotgun proteomics using high resolution mass spectrometry

Title
Target-Decoy with Mass Binning: a simple and effective validation method for shotgun proteomics using high resolution mass spectrometry
Authors
주종화나승진백제현이철주백은옥
Keywords
target-decoy; peptide identification; validation method; precursor mass error; high resolution mass spectrometry
Issue Date
2010-02
Publisher
Journal of proteome research
Citation
VOL 9, NO 2, 1150-1156
Abstract
Shotgun proteomics using mass spectrometry (MS) has become the choice for large-scale peptide and protein identification. The recent development of high-resolution mass spectrometers such as FT-ICR or Orbitrap makes it possible to identify peptides within only a few parts per million (ppm), and it is expected to dramatically improve performance of peptide identification, as compared to low-resolution instruments. To fully exploit such significantly higher mass accuracy, however, appropriate data analysis methods are required. Here, we present a new target-decoy strategy, called Target-Decoy with Mass Binning, utilizing high mass accuracy for peptide identification validation, which remains a challenging problem in MS-based proteomics. When tested on various high-resolution MS data, our method was very effective and yet simple and showed comparable or better performance when compared with other validation methods.
URI
http://pubs.kist.re.kr/handle/201004/37274
ISSN
1535-3893
Appears in Collections:
KIST Publication > Article
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