Identification of characteristic molecular signature for volatile organic compounds in peripheral blood of rat

Title
Identification of characteristic molecular signature for volatile organic compounds in peripheral blood of rat
Authors
김정규정광화노지헌은정우배현진사홍건장자준류재천박원상이준영Suk Woo Nam
Keywords
Volatile Organic Compounds; Dichloromethane; Ethylbenzene; Trichloroethylene; Molecular signature; Detection
Issue Date
2011-01
Publisher
Toxicology and applied pharmacology
Citation
VOL 250, NO 2, 162-169
Abstract
In a previous report we demonstrated that the transcriptomic response of liver tissue was specific to toxicants, and a characteristic molecular signature could be used as an early prognostic biomarker in rats. It is necessary to determine the transcriptomic response to toxicants in peripheral blood for application to the human system. Volatile organic compounds (VOCs) comprise a major group of pollutants which significantly affect the chemistry of the atmosphere and human health. In this study we identified and validated the specific molecular signatures of toxicants in rat whole blood as early predictors of environmental toxicants. VOCs (dichloromethane, ethylbenzene, and trichloroethylene) were administered to 11-week-old SD male rats after 48 h of exposure, peripheral whole blood was subjected to expression profiling analysis. Unsupervised gene expression analysis resulted in a characteristic molecular signature for each toxicant, and supervised analysis identified 1,217 outlier genes as distinct molecular signatures discerning VOC exposure from healthy controls. Further analysis of multi-classification suggested 337 genes as early detective molecular markers for three VOCs with 100% accuracy. A large-scale gene expression analysis of a different VOC exposure animal model suggested that characteristic expression profiles exist in blood cells and multi-classification of this VOC-specific molecular signature can discriminate each toxicant at an early exposure time. This blood expression signature can thus be used as discernable surrogate marker for detection of biological responses to VOC exposure in an environment.
URI
http://pubs.kist.re.kr/handle/201004/38759
ISSN
0041-008X
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