Lee, HJ Ahn, IA Ro, S Choi, KH Choi, YS Lee, KB 2024-01-21T13:43:21Z 2024-01-21T13:43:21Z 2022-01-10 2000-07 1397-002X https://pubs.kist.re.kr/handle/201004/141257 The structural perturbation induced by (CH)-H-alpha-->N-alpha exchange in azaamino acid-containing peptides was predicted by ab initio calculation of the 6-31G* and 3-21G* levels. The global energy-minimum conformations for model compounds, For-asaXaa-NH2 (Xaa=Gly, Ala, Leu) appeared to be the beta-turn motif with a dihedral angle of phi=+/-90 degrees, psi=0 degrees. This suggests that incorporation of the azaXaa residue into the i+2 position of designed peptides could stabilize the beta-turn structure. The model azaLeu-containing peptide, Boc-Phe-azaLeu-Ala-OMe, which is predicted to adopt a beta-turn conformation was designed and synthesized in order to experimentally elucidate the role of the azaamino acid residue. Its structural preference in organic solvents was investigated using H-1 NMR, molecular modelling and IR spectroscopy. The temperature coefficients of amide protons, the characteristic NOE patterns, the restrained molecular dynamics simulation and IR spectroscopy defined the dihedral angles [(phi(i+1), psi(i+1)) (phi(i+2), psi(i+2))] of the Phe-azaLeu fragment in the model peptide, Boc-Phe-azaLeu-Ala-OMe, as [(-59 degrees, 127 degrees) (107 degrees, -4 degrees)]. This solution conformation supports a pit-turn structural preference in azaLeu-containing peptides as predicted by the quantum chemical calculation. Therefore, intercalation of the azaamino acid residue into the i+2 position in synthetic peptides is expected to provide a stable beta-turn formation, and this could be utilized in the design of new peptidomimetics adopting a beta-turn scaffold. English MUNKSGAARD INT PUBL LTD ASPARAGINE-CONTAINING PEPTIDES NUCLEAR-MAGNETIC-RESONANCE SECONDARY STRUCTURE COUPLING-CONSTANTS DISTANCE GEOMETRY AZA-PEPTIDES ALANINE PROTEIN HAIRPIN SPECTROSCOPY Role of azaamino acid residue in beta-turn formation and stalbility in designed peptide Article 10.1034/j.1399-3011.2000.00717.x 1 JOURNAL OF PEPTIDE RESEARCH, v.56, no.1, pp.35 - 46 JOURNAL OF PEPTIDE RESEARCH 56 1 35 46 scie scopus 000088215700005 2-s2.0-0033918938 Biochemical Research Methods Biochemistry & Molecular Biology Biochemistry & Molecular Biology Article ASPARAGINE-CONTAINING PEPTIDES NUCLEAR-MAGNETIC-RESONANCE SECONDARY STRUCTURE COUPLING-CONSTANTS DISTANCE GEOMETRY AZA-PEPTIDES ALANINE PROTEIN HAIRPIN SPECTROSCOPY ab initio calculation azapeptide beta-turn IR molecular dynamics NMR